J3_6IP8_014
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 6IP8|1|1A|A|4464, 6IP8|1|1A|U|4465
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6IP8_014 not in the Motif Atlas
- Homologous match to J3_5TBW_014
- Geometric discrepancy: 0.1299
- The information below is about J3_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6IP8|1|1A|U|4463
6IP8|1|1A|A|4464
6IP8|1|1A|U|4465
6IP8|1|1A|C|4466
*
6IP8|1|1A|G|4491
6IP8|1|1A|U|4492
6IP8|1|1A|U|4493
*
6IP8|1|1A|A|4507
6IP8|1|1A|C|4508
6IP8|1|1A|U|4509
6IP8|1|1A|A|4510
6IP8|1|1A|A|4511
6IP8|1|1A|U|4512
6IP8|1|1A|A|4513
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1E
- 60S ribosomal protein L3
- Chain 2I
- 60S ribosomal protein L13a
- Chain 2P
- 60S ribosomal protein L23
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