J3_6LKQ_003
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUG*CGGAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 6LKQ|1|s|U|871
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6LKQ_003 not in the Motif Atlas
- Homologous match to J3_5J7L_004
- Geometric discrepancy: 0.091
- The information below is about J3_5J7L_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
6LKQ|1|s|C|826
6LKQ|1|s|U|827
6LKQ|1|s|U|828
6LKQ|1|s|G|829
*
6LKQ|1|s|C|857
6LKQ|1|s|G|858
6LKQ|1|s|G|859
6LKQ|1|s|A|860
6LKQ|1|s|G|861
*
6LKQ|1|s|C|868
6LKQ|1|s|G|869
6LKQ|1|s|U|870
6LKQ|1|s|U|871
6LKQ|1|s|A|872
6LKQ|1|s|A|873
6LKQ|1|s|G|874
Current chains
- Chain s
- 16S ribosomal RNA
Nearby chains
- Chain A
- 30S ribosomal protein S2
- Chain G
- 30S ribosomal protein S8
- Chain T
- 30S ribosomal protein S21
Coloring options: