3D structure

PDB id
6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGGAAG*CAG*CAAG
Length
13 nucleotides
Bulged bases
6LKQ|1|t|A|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6LKQ_016 not in the Motif Atlas
Homologous match to J3_5J7L_041
Geometric discrepancy: 0.0956
The information below is about J3_5J7L_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.6
Basepair signature
cWW-tSH-F-F-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

6LKQ|1|t|C|1298
6LKQ|1|t|G|1299
6LKQ|1|t|G|1300
6LKQ|1|t|A|1301
6LKQ|1|t|A|1302
6LKQ|1|t|G|1303
*
6LKQ|1|t|C|1625
6LKQ|1|t|A|1626
6LKQ|1|t|G|1627
*
6LKQ|1|t|C|1639
6LKQ|1|t|A|1640
6LKQ|1|t|A|1641
6LKQ|1|t|G|1642

Current chains

Chain t
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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