J3_6LKQ_016

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

6LKQ|1|t|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6LKQ_016 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0956

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6LKQ|1|t|C|1298
6LKQ|1|t|G|1299
6LKQ|1|t|G|1300
6LKQ|1|t|A|1301
6LKQ|1|t|A|1302
6LKQ|1|t|G|1303
*
6LKQ|1|t|C|1625
6LKQ|1|t|A|1626
6LKQ|1|t|G|1627
*
6LKQ|1|t|C|1639
6LKQ|1|t|A|1640
6LKQ|1|t|A|1641
6LKQ|1|t|G|1642

Current chains

Chain t

23S ribosomal RNA

Nearby chains