J3_6LKQ_024
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 6LKQ|1|u|U|14, 6LKQ|1|u|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6LKQ_024 not in the Motif Atlas
- Homologous match to J3_7A0S_014
- Geometric discrepancy: 0.2196
- The information below is about J3_7A0S_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_13944.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6LKQ|1|u|G|10
6LKQ|1|u|C|11
6LKQ|1|u|C|12
6LKQ|1|u|G|13
6LKQ|1|u|U|14
6LKQ|1|u|A|15
6LKQ|1|u|G|16
*
6LKQ|1|u|C|68
6LKQ|1|u|G|69
6LKQ|1|u|C|70
*
6LKQ|1|u|G|106
6LKQ|1|u|G|107
6LKQ|1|u|A|108
6LKQ|1|u|A|109
6LKQ|1|u|C|110
Current chains
- Chain u
- 5S ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L18
- Chain e
- 50S ribosomal protein L27
- Chain t
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: