J3_6LKQ_025
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 6LKQ|1|s|C|48, 6LKQ|1|s|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6LKQ_025 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.0981
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6LKQ|1|s|G|46
6LKQ|1|s|C|47
6LKQ|1|s|C|48
6LKQ|1|s|U|49
6LKQ|1|s|A|50
6LKQ|1|s|A|51
6LKQ|1|s|C|52
*
6LKQ|1|s|G|359
6LKQ|1|s|G|360
6LKQ|1|s|G|361
6LKQ|1|s|G|362
6LKQ|1|s|A|363
6LKQ|1|s|A|364
6LKQ|1|s|U|365
6LKQ|1|s|A|366
6LKQ|1|s|U|367
*
6LKQ|1|s|A|393
6LKQ|1|s|G|394
6LKQ|1|s|C|395
Current chains
- Chain s
- 16S ribosomal RNA
Nearby chains
- Chain K
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S16
- Chain v
- Peptide chain release factor 3
Coloring options: