J3_6LKQ_032
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 6LKQ|1|t|A|504, 6LKQ|1|t|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6LKQ_032 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.1333
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6LKQ|1|t|G|30
6LKQ|1|t|C|31
*
6LKQ|1|t|G|474
6LKQ|1|t|C|475
6LKQ|1|t|G|476
6LKQ|1|t|A|477
6LKQ|1|t|A|478
6LKQ|1|t|A|479
6LKQ|1|t|A|480
6LKQ|1|t|G|481
6LKQ|1|t|A|482
6LKQ|1|t|A|483
6LKQ|1|t|C|484
*
6LKQ|1|t|G|496
6LKQ|1|t|A|497
6LKQ|1|t|G|498
6LKQ|1|t|U|499
6LKQ|1|t|G|500
6LKQ|1|t|A|501
6LKQ|1|t|A|502
6LKQ|1|t|A|503
6LKQ|1|t|A|504
6LKQ|1|t|A|505
6LKQ|1|t|G|506
6LKQ|1|t|A|507
6LKQ|1|t|A|508
6LKQ|1|t|C|509
6LKQ|1|t|C|510
Current chains
- Chain t
- 23S ribosomal RNA
Nearby chains
- Chain 8
- 50S ribosomal protein L20
- Chain a
- 50S ribosomal protein L22
- Chain c
- 50S ribosomal protein L24
Coloring options: