J3_6LQP_005

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6LQP_005 not in the Motif Atlas

Homologous match to J3_8C3A_039

Geometric discrepancy: 0.2495

The information below is about J3_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.3

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6LQP|1|SA|U|1168
6LQP|1|SA|G|1169
6LQP|1|SA|G|1170
6LQP|1|SA|A|1171
*
6LQP|1|SA|U|1468
6LQP|1|SA|A|1469
6LQP|1|SA|C|1470
*
6LQP|1|SA|G|1574
6LQP|1|SA|G|1575
6LQP|1|SA|A|1576
6LQP|1|SA|A|1577

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain 5G

U3 small nucleolar ribonucleoprotein protein IMP4

Chain RH

Ribosomal RNA small subunit methyltransferase NEP1

Chain RN

Nucleolar complex protein 14