J3_6LSR_006

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

6LSR|1|2|A|1805, 6LSR|1|2|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6LSR_006 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.401

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6LSR|1|2|U|1726
6LSR|1|2|U|1727
*
6LSR|1|2|A|1802
6LSR|1|2|G|1803
6LSR|1|2|A|1804
6LSR|1|2|A|1805
6LSR|1|2|G|1806
*
6LSR|1|2|C|1832
6LSR|1|2|G|1833
6LSR|1|2|U|1834
6LSR|1|2|G|1835
6LSR|1|2|G|1836
6LSR|1|2|A|1837

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain c

60S ribosomal protein L21

Chain w

60S ribosomal protein L7