3D structure

PDB id
6M62 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGAACUA*UAG*CGAA
Length
14 nucleotides
Bulged bases
6M62|1|1|A|817, 6M62|1|1|G|924, 6M62|1|1|A|925
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6M62_004 not in the Motif Atlas
Homologous match to J3_5TBW_004
Geometric discrepancy: 0.1549
The information below is about J3_5TBW_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_39238.5
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

6M62|1|1|U|814
6M62|1|1|G|815
6M62|1|1|A|816
6M62|1|1|A|817
6M62|1|1|C|818
6M62|1|1|U|819
6M62|1|1|A|820
*
6M62|1|1|U|905
6M62|1|1|A|906
6M62|1|1|G|907
*
6M62|1|1|C|923
6M62|1|1|G|924
6M62|1|1|A|925
6M62|1|1|A|926

Current chains

Chain 1
RDN25-1 rRNA

Nearby chains

Chain A
60S ribosomal protein L2-A
Chain N
60S ribosomal protein L15-A
Chain b
Nucleolar GTP-binding protein 1
Chain j
60S ribosomal protein L37-A
Chain l
60S ribosomal protein L39

Coloring options:


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