3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUAG*CGAAG*CGUUAAG
Length
16 nucleotides
Bulged bases
6N1D|1|A16S|U|871
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6N1D_004 not in the Motif Atlas
Homologous match to J3_6CZR_018
Geometric discrepancy: 0.1114
The information below is about J3_6CZR_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.3
Basepair signature
cWW-tSH-F-tWW-tHS-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

6N1D|1|A16S|C|826
6N1D|1|A16S|U|827
6N1D|1|A16S|A|828
6N1D|1|A16S|G|829
*
6N1D|1|A16S|C|857
6N1D|1|A16S|G|858
6N1D|1|A16S|A|859
6N1D|1|A16S|A|860
6N1D|1|A16S|G|861
*
6N1D|1|A16S|C|868
6N1D|1|A16S|G|869
6N1D|1|A16S|U|870
6N1D|1|A16S|U|871
6N1D|1|A16S|A|872
6N1D|1|A16S|A|873
6N1D|1|A16S|G|874

Current chains

Chain A16S
16S rRNA

Nearby chains

Chain AMRN
mRNA
Chain AS02
30S ribosomal protein S2
Chain AS08
30S ribosomal protein S8

Coloring options:


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