J3_6N1D_030

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6N1D|1|B16S|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N1D_030 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1147

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6N1D|1|B16S|C|826
6N1D|1|B16S|U|827
6N1D|1|B16S|A|828
6N1D|1|B16S|G|829
*
6N1D|1|B16S|C|857
6N1D|1|B16S|G|858
6N1D|1|B16S|A|859
6N1D|1|B16S|A|860
6N1D|1|B16S|G|861
*
6N1D|1|B16S|C|868
6N1D|1|B16S|G|869
6N1D|1|B16S|U|870
6N1D|1|B16S|U|871
6N1D|1|B16S|A|872
6N1D|1|B16S|A|873
6N1D|1|B16S|G|874

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BMRN

mRNA

Chain BS02

30S ribosomal protein S2

Chain BS08

30S ribosomal protein S8