J3_6N1D_040

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N1D_040 not in the Motif Atlas

Homologous match to J3_7A0S_001

Geometric discrepancy: 0.1382

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

6N1D|1|B23S|G|30
6N1D|1|B23S|C|31
*
6N1D|1|B23S|G|474
6N1D|1|B23S|U|475
6N1D|1|B23S|G|476
6N1D|1|B23S|A|477
6N1D|1|B23S|A|478
6N1D|1|B23S|A|479
6N1D|1|B23S|A|480
6N1D|1|B23S|G|481
*
6N1D|1|B23S|C|509
6N1D|1|B23S|C|510

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL20

50S ribosomal protein L20

Chain BL22

50S ribosomal protein L22

Chain BL24

50S ribosomal protein L24