J3_6N1D_045

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N1D_045 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.3628

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

6N1D|1|B23S|G|1055
6N1D|1|B23S|G|1056
6N1D|1|B23S|A|1057
*
6N1D|1|B23S|U|1081
6N1D|1|B23S|U|1082
6N1D|1|B23S|U|1083
6N1D|1|B23S|A|1084
6N1D|1|B23S|A|1085
6N1D|1|B23S|A|1086
6N1D|1|B23S|G|1087
*
6N1D|1|B23S|C|1102
6N1D|1|B23S|A|1103
6N1D|1|B23S|C|1104

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL36

50S ribosomal protein L36