J3_6N1D_060

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

6N1D|1|A23S|U|504, 6N1D|1|A23S|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N1D_060 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2481

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6N1D|1|A23S|G|30
6N1D|1|A23S|C|31
*
6N1D|1|A23S|G|474
6N1D|1|A23S|U|475
6N1D|1|A23S|G|476
6N1D|1|A23S|A|477
6N1D|1|A23S|A|478
6N1D|1|A23S|A|479
6N1D|1|A23S|A|480
6N1D|1|A23S|G|481
6N1D|1|A23S|A|482
6N1D|1|A23S|A|483
6N1D|1|A23S|C|484
*
6N1D|1|A23S|G|496
6N1D|1|A23S|A|497
6N1D|1|A23S|G|498
6N1D|1|A23S|U|499
6N1D|1|A23S|G|500
6N1D|1|A23S|A|501
6N1D|1|A23S|A|502
6N1D|1|A23S|A|503
6N1D|1|A23S|U|504
6N1D|1|A23S|A|505
6N1D|1|A23S|G|506
6N1D|1|A23S|A|507
6N1D|1|A23S|G|508
6N1D|1|A23S|C|509
6N1D|1|A23S|C|510

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL20

50S ribosomal protein L20

Chain AL22

50S ribosomal protein L22

Chain AL24

50S ribosomal protein L24