J3_6N1D_061

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6N1D|1|A23S|C|34, 6N1D|1|A23S|U|448, 6N1D|1|A23S|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N1D_061 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.1322

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

6N1D|1|A23S|C|32
6N1D|1|A23S|U|33
6N1D|1|A23S|C|34
6N1D|1|A23S|G|35
*
6N1D|1|A23S|C|445
6N1D|1|A23S|G|446
6N1D|1|A23S|A|447
6N1D|1|A23S|U|448
6N1D|1|A23S|A|449
6N1D|1|A23S|G|450
6N1D|1|A23S|C|451
6N1D|1|A23S|G|452
6N1D|1|A23S|C|453
6N1D|1|A23S|A|454
6N1D|1|A23S|C|455
6N1D|1|A23S|C|456
6N1D|1|A23S|A|457
6N1D|1|A23S|G|458
6N1D|1|A23S|U|459
6N1D|1|A23S|A|460
6N1D|1|A23S|C|461
*
6N1D|1|A23S|G|468
6N1D|1|A23S|G|469
6N1D|1|A23S|A|470
6N1D|1|A23S|A|471
6N1D|1|A23S|A|472
6N1D|1|A23S|G|473

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL04

50S ribosomal protein L4

Chain AL20

50S ribosomal protein L20

Chain AL23

50S ribosomal protein L23

Chain AL34

50S ribosomal protein L34