3D structure

PDB id
6NUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CAAUG*CCCAGUUC*GCCG
Length
17 nucleotides
Bulged bases
6NUO|1|XA|U|1240, 6NUO|1|XA|U|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6NUO_038 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.1858
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

6NUO|1|XA|C|1237
6NUO|1|XA|A|1238
6NUO|1|XA|A|1239
6NUO|1|XA|U|1240
6NUO|1|XA|G|1241
*
6NUO|1|XA|C|1296
6NUO|1|XA|C|1297
6NUO|1|XA|C|1298
6NUO|1|XA|A|1299
6NUO|1|XA|G|1300
6NUO|1|XA|U|1301
6NUO|1|XA|U|1302
6NUO|1|XA|C|1303
*
6NUO|1|XA|G|1334
6NUO|1|XA|C|1335
6NUO|1|XA|C|1336
6NUO|1|XA|G|1337

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XG
30S ribosomal protein S7
Chain XM
30S ribosomal protein S13
Chain XU
30S ribosomal protein Thx

Coloring options:


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