J3_6NUO_060
3D structure
- PDB id
- 6NUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6NUO|1|RA|C|34, 6NUO|1|RA|U|474, 6NUO|1|RA|C|482
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6NUO_060 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0906
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6NUO|1|RA|C|32
6NUO|1|RA|U|33
6NUO|1|RA|C|34
6NUO|1|RA|G|35
*
6NUO|1|RA|C|471
6NUO|1|RA|G|472
6NUO|1|RA|A|473
6NUO|1|RA|U|474
6NUO|1|RA|A|475
6NUO|1|RA|G|476
6NUO|1|RA|C|477
6NUO|1|RA|G|478
6NUO|1|RA|C|479
6NUO|1|RA|A|480
6NUO|1|RA|C|481
6NUO|1|RA|C|482
6NUO|1|RA|A|483
6NUO|1|RA|G|484
6NUO|1|RA|U|485
6NUO|1|RA|A|486
6NUO|1|RA|C|487
*
6NUO|1|RA|G|494
6NUO|1|RA|G|495
6NUO|1|RA|A|496
6NUO|1|RA|A|497
6NUO|1|RA|A|498
6NUO|1|RA|G|499
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R7
- 50S ribosomal protein L34
- Chain RF
- 50S ribosomal protein L4
- Chain RU
- 50S ribosomal protein L20
- Chain RX
- 50S ribosomal protein L23
Coloring options: