J3_6NUO_068

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6NUO|1|XA|U|1212, 6NUO|1|XA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NUO_068 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.2084

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6NUO|1|XA|C|990
6NUO|1|XA|U|991
6NUO|1|XA|U|992
6NUO|1|XA|G|993
6NUO|1|XA|A|994
6NUO|1|XA|C|995
6NUO|1|XA|A|996
6NUO|1|XA|U|997
*
6NUO|1|XA|A|1044
6NUO|1|XA|C|1045
6NUO|1|XA|A|1046
6NUO|1|XA|G|1047
*
6NUO|1|XA|C|1210
6NUO|1|XA|U|1211
6NUO|1|XA|U|1212
6NUO|1|XA|A|1213
6NUO|1|XA|C|1214
6NUO|1|XA|G|1215

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XC

30S ribosomal protein S3

Chain XN

30S ribosomal protein S14 type Z