3D structure

PDB id
6OGG (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
6OGG|1|3|U|1240, 6OGG|1|3|G|1297, 6OGG|1|3|C|1302, 6OGG|1|3|C|1336
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OGG_024 not in the Motif Atlas
Homologous match to J3_5J7L_011
Geometric discrepancy: 0.3804
The information below is about J3_5J7L_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

6OGG|1|3|C|1237
6OGG|1|3|A|1238
6OGG|1|3|A|1239
6OGG|1|3|U|1240
6OGG|1|3|G|1241
*
6OGG|1|3|C|1296
6OGG|1|3|G|1297
6OGG|1|3|U|1298
6OGG|1|3|A|1299
6OGG|1|3|G|1300
6OGG|1|3|U|1301
6OGG|1|3|C|1302
6OGG|1|3|C|1303
*
6OGG|1|3|G|1334
6OGG|1|3|U|1335
6OGG|1|3|C|1336
6OGG|1|3|G|1337

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain L
30S ribosomal protein S7
Chain R
30S ribosomal protein S13

Coloring options:


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