3D structure

PDB id
6OGG (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
GGGACG*CC*GAAAAGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OGG_028 not in the Motif Atlas
Homologous match to J3_5J7L_069
Geometric discrepancy: 0.2246
The information below is about J3_5J7L_069
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_34864.2
Basepair signature
cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6OGG|1|1|G|1424
6OGG|1|1|G|1425
6OGG|1|1|G|1426
6OGG|1|1|A|1427
6OGG|1|1|C|1428
6OGG|1|1|G|1429
*
6OGG|1|1|C|1564
6OGG|1|1|C|1565
*
6OGG|1|1|G|1568
6OGG|1|1|A|1569
6OGG|1|1|A|1570
6OGG|1|1|A|1571
6OGG|1|1|A|1572
6OGG|1|1|G|1573
6OGG|1|1|C|1574

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain b
50S ribosomal protein L2

Coloring options:


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