J3_6OGG_028

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OGG_028 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.2246

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6OGG|1|1|G|1424
6OGG|1|1|G|1425
6OGG|1|1|G|1426
6OGG|1|1|A|1427
6OGG|1|1|C|1428
6OGG|1|1|G|1429
*
6OGG|1|1|C|1564
6OGG|1|1|C|1565
*
6OGG|1|1|G|1568
6OGG|1|1|A|1569
6OGG|1|1|A|1570
6OGG|1|1|A|1571
6OGG|1|1|A|1572
6OGG|1|1|G|1573
6OGG|1|1|C|1574

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2