J3_6OIG_004
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 6OIG|1|5|A|817, 6OIG|1|5|G|924
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OIG_004 not in the Motif Atlas
- Homologous match to J3_5TBW_004
- Geometric discrepancy: 0.2258
- The information below is about J3_5TBW_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6OIG|1|5|U|814
6OIG|1|5|G|815
6OIG|1|5|A|816
6OIG|1|5|A|817
6OIG|1|5|C|818
6OIG|1|5|U|819
6OIG|1|5|A|820
*
6OIG|1|5|U|905
6OIG|1|5|A|906
6OIG|1|5|G|907
*
6OIG|1|5|C|923
6OIG|1|5|G|924
6OIG|1|5|A|925
6OIG|1|5|A|926
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain N
- 60S ribosomal protein L15-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
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