J3_6OIG_017
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 6OIG|1|8|C|62
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OIG_017 not in the Motif Atlas
- Homologous match to J3_8P4V_024
- Geometric discrepancy: 0.2415
- The information below is about J3_8P4V_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
6OIG|1|8|A|44
6OIG|1|8|C|45
*
6OIG|1|8|G|58
6OIG|1|8|A|59
6OIG|1|8|U|60
6OIG|1|8|A|61
6OIG|1|8|C|62
6OIG|1|8|G|63
6OIG|1|8|U|64
*
6OIG|1|8|A|96
6OIG|1|8|A|97
6OIG|1|8|U|98
6OIG|1|8|C|99
6OIG|1|8|U|100
Current chains
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain X
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
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