J3_6OLE_020
3D structure
- PDB id
- 6OLE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 6OLE|1|t|A|1516, 6OLE|1|t|G|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OLE_020 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.096
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6OLE|1|t|U|1513
6OLE|1|t|G|1514
6OLE|1|t|A|1515
6OLE|1|t|A|1516
6OLE|1|t|C|1517
6OLE|1|t|U|1518
6OLE|1|t|A|1519
*
6OLE|1|t|U|1604
6OLE|1|t|A|1605
6OLE|1|t|G|1606
*
6OLE|1|t|C|1622
6OLE|1|t|G|1623
6OLE|1|t|A|1624
6OLE|1|t|A|1625
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain O
- 60S ribosomal protein L15
- Chain k
- 60S ribosomal protein L37
- Chain m
- 60S ribosomal protein L39
- Chain y
- Cadherin-1
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