3D structure

PDB id
6OLF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AGAG*CAG*CUGGAU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OLF_006 not in the Motif Atlas
Homologous match to J3_4V88_032
Geometric discrepancy: 0.2568
The information below is about J3_4V88_032
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_54972.1
Basepair signature
cWW-tWW-F-cWW-F-tHS-F-cWW
Number of instances in this motif group
2

Unit IDs

6OLF|1|S2|A|816
6OLF|1|S2|G|817
6OLF|1|S2|A|818
6OLF|1|S2|G|819
*
6OLF|1|S2|C|829
6OLF|1|S2|A|830
6OLF|1|S2|G|831
*
6OLF|1|S2|C|843
6OLF|1|S2|U|844
6OLF|1|S2|G|845
6OLF|1|S2|G|846
6OLF|1|S2|A|847
6OLF|1|S2|U|848

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SE
40S ribosomal protein S4, X isoform
Chain SJ
40S ribosomal protein S9
Chain SY
40S ribosomal protein S24

Coloring options:


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