J3_6OLF_022

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

6OLF|1|t|A|2375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OLF_022 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.1844

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6OLF|1|t|C|2372
6OLF|1|t|G|2373
6OLF|1|t|A|2374
6OLF|1|t|A|2375
6OLF|1|t|G|2376
6OLF|1|t|U|2377
6OLF|1|t|G|2378
*
6OLF|1|t|C|2784
6OLF|1|t|A|2785
6OLF|1|t|A|2786
*
6OLF|1|t|U|2798
6OLF|1|t|C|2799
6OLF|1|t|U|2800
6OLF|1|t|G|2801

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L19

Chain h

60S ribosomal protein L34