J3_6OLF_026

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OLF_026 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.2463

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6OLF|1|t|U|2554
6OLF|1|t|G|2555
*
6OLF|1|t|C|2564
6OLF|1|t|G|2565
6OLF|1|t|A|2566
6OLF|1|t|C|2567
6OLF|1|t|C|2568
*
6OLF|1|t|G|2735
6OLF|1|t|A|2736

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain a

60S ribosomal protein L27

Chain h

60S ribosomal protein L34