J3_6OST_005

3D structure

PDB id

6OST (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 pre-accommodated state bound Release complex 70S at 24ms

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

6OST|1|1|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OST_005 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.121

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6OST|1|1|C|1298
6OST|1|1|G|1299
6OST|1|1|G|1300
6OST|1|1|A|1301
6OST|1|1|A|1302
6OST|1|1|G|1303
*
6OST|1|1|C|1625
6OST|1|1|A|1626
6OST|1|1|G|1627
*
6OST|1|1|C|1639
6OST|1|1|A|1640
6OST|1|1|A|1641
6OST|1|1|G|1642

Current chains

Chain 1

23S Ribosomal RNA

Nearby chains