J3_6OST_016

3D structure

PDB id

6OST (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 pre-accommodated state bound Release complex 70S at 24ms

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6OST|1|2|U|871, 6OST|1|2|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OST_016 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1176

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6OST|1|2|C|826
6OST|1|2|U|827
6OST|1|2|U|828
6OST|1|2|G|829
*
6OST|1|2|C|857
6OST|1|2|G|858
6OST|1|2|G|859
6OST|1|2|A|860
6OST|1|2|G|861
*
6OST|1|2|C|868
6OST|1|2|G|869
6OST|1|2|U|870
6OST|1|2|U|871
6OST|1|2|A|872
6OST|1|2|A|873
6OST|1|2|G|874

Current chains

Chain 2

16S Ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain m

30S ribosomal protein S8

Chain z

30S ribosomal protein S21