J3_6P5J_024

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6P5J_024 not in the Motif Atlas

Geometric match to J3_7A0S_009

Geometric discrepancy: 0.3139

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6P5J|1|5|C|3937
6P5J|1|5|G|3938
6P5J|1|5|G|3939
*
6P5J|1|5|C|4074
6P5J|1|5|U|4075
6P5J|1|5|G|4076
6P5J|1|5|A|4077
6P5J|1|5|C|4078
*
6P5J|1|5|G|4168
6P5J|1|5|G|4169
6P5J|1|5|A|4170
6P5J|1|5|C|4171
6P5J|1|5|A|4172
6P5J|1|5|G|4173

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AA

uL2

Chain AG

eL8

Chain AN

eL15