3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGAACUA*UAG*CGAA
Length
14 nucleotides
Bulged bases
6P5K|1|5|A|1534, 6P5K|1|5|G|1641
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6P5K_016 not in the Motif Atlas
Homologous match to J3_8C3A_003
Geometric discrepancy: 0.0743
The information below is about J3_8C3A_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_39238.5
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

6P5K|1|5|U|1531
6P5K|1|5|G|1532
6P5K|1|5|A|1533
6P5K|1|5|A|1534
6P5K|1|5|C|1535
6P5K|1|5|U|1536
6P5K|1|5|A|1537
*
6P5K|1|5|U|1622
6P5K|1|5|A|1623
6P5K|1|5|G|1624
*
6P5K|1|5|C|1640
6P5K|1|5|G|1641
6P5K|1|5|A|1642
6P5K|1|5|A|1643

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AA
uL2
Chain AN
eL15
Chain Aj
eL37
Chain Al
eL39

Coloring options:


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