J3_6P5K_023

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6P5K_023 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.2846

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6P5K|1|5|U|2575
6P5K|1|5|G|2576
*
6P5K|1|5|C|2585
6P5K|1|5|G|2586
6P5K|1|5|A|2587
6P5K|1|5|C|2588
6P5K|1|5|C|2589
*
6P5K|1|5|G|2756
6P5K|1|5|A|2757

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AZ

eL27

Chain Ag

eL34