J3_6P5K_031
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AC*GAGAAUU*ACACU
- Length
- 14 nucleotides
- Bulged bases
- 6P5K|1|8|A|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6P5K_031 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.1774
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
6P5K|1|8|A|44
6P5K|1|8|C|45
*
6P5K|1|8|G|58
6P5K|1|8|A|59
6P5K|1|8|G|60
6P5K|1|8|A|61
6P5K|1|8|A|62
6P5K|1|8|U|63
6P5K|1|8|U|64
*
6P5K|1|8|A|95
6P5K|1|8|C|96
6P5K|1|8|A|97
6P5K|1|8|C|98
6P5K|1|8|U|99
Current chains
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain AX
- eL23
- Chain Ah
- eL35
- Chain Aj
- eL37
- Chain Al
- eL39
Coloring options: