J3_6Q95_016

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6Q95|1|2|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Q95_016 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1114

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6Q95|1|2|C|826
6Q95|1|2|U|827
6Q95|1|2|A|828
6Q95|1|2|G|829
*
6Q95|1|2|C|857
6Q95|1|2|G|858
6Q95|1|2|A|859
6Q95|1|2|A|860
6Q95|1|2|G|861
*
6Q95|1|2|C|868
6Q95|1|2|G|869
6Q95|1|2|U|870
6Q95|1|2|U|871
6Q95|1|2|A|872
6Q95|1|2|A|873
6Q95|1|2|G|874

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain j

30S ribosomal protein S5

Chain m

30S ribosomal protein S8