3D structure

PDB id
6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CUUGACAU*ACAG*CUUACG
Length
18 nucleotides
Bulged bases
6Q95|1|2|U|1212, 6Q95|1|2|C|1214
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6Q95_031 not in the Motif Atlas
Homologous match to J3_4LFB_016
Geometric discrepancy: 0.2004
The information below is about J3_4LFB_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76475.2
Basepair signature
cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
Number of instances in this motif group
2

Unit IDs

6Q95|1|2|C|990
6Q95|1|2|U|991
6Q95|1|2|U|992
6Q95|1|2|G|993
6Q95|1|2|A|994
6Q95|1|2|C|995
6Q95|1|2|A|996
6Q95|1|2|U|997
*
6Q95|1|2|A|1044
6Q95|1|2|C|1045
6Q95|1|2|A|1046
6Q95|1|2|G|1047
*
6Q95|1|2|C|1210
6Q95|1|2|U|1211
6Q95|1|2|U|1212
6Q95|1|2|A|1213
6Q95|1|2|C|1214
6Q95|1|2|G|1215

Current chains

Chain 2
16S RIBOSOMAL RNA

Nearby chains

Chain 5
SsrA-binding protein
Chain h
30S ribosomal protein S3
Chain s
30S ribosomal protein S14 type Z

Coloring options:


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