J3_6Q97_005

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

6Q97|1|1|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Q97_005 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1889

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6Q97|1|1|C|1298
6Q97|1|1|G|1299
6Q97|1|1|G|1300
6Q97|1|1|A|1301
6Q97|1|1|A|1302
6Q97|1|1|G|1303
*
6Q97|1|1|C|1625
6Q97|1|1|A|1626
6Q97|1|1|G|1627
*
6Q97|1|1|C|1639
6Q97|1|1|A|1640
6Q97|1|1|A|1641
6Q97|1|1|G|1642

Current chains

Chain 1

23S ribosomal RNA

Nearby chains