3D structure

PDB id
6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
6Q97|1|1|A|504, 6Q97|1|1|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6Q97_021 not in the Motif Atlas
Homologous match to J3_9DFE_002
Geometric discrepancy: 0.1721
The information below is about J3_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6Q97|1|1|G|30
6Q97|1|1|C|31
*
6Q97|1|1|G|474
6Q97|1|1|C|475
6Q97|1|1|G|476
6Q97|1|1|A|477
6Q97|1|1|A|478
6Q97|1|1|A|479
6Q97|1|1|A|480
6Q97|1|1|G|481
6Q97|1|1|A|482
6Q97|1|1|A|483
6Q97|1|1|C|484
*
6Q97|1|1|G|496
6Q97|1|1|A|497
6Q97|1|1|G|498
6Q97|1|1|U|499
6Q97|1|1|G|500
6Q97|1|1|A|501
6Q97|1|1|A|502
6Q97|1|1|A|503
6Q97|1|1|A|504
6Q97|1|1|A|505
6Q97|1|1|G|506
6Q97|1|1|A|507
6Q97|1|1|A|508
6Q97|1|1|C|509
6Q97|1|1|C|510

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 6
Nascent peptide
Chain Q
50S ribosomal protein L20
Chain S
50S ribosomal protein L22
Chain U
50S ribosomal protein L24

Coloring options:


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