J3_6Q97_048

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6Q97|1|2|U|991, 6Q97|1|2|U|1212, 6Q97|1|2|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Q97_048 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.2261

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6Q97|1|2|C|990
6Q97|1|2|U|991
6Q97|1|2|U|992
6Q97|1|2|G|993
6Q97|1|2|A|994
6Q97|1|2|C|995
6Q97|1|2|A|996
6Q97|1|2|U|997
*
6Q97|1|2|A|1044
6Q97|1|2|C|1045
6Q97|1|2|A|1046
6Q97|1|2|G|1047
*
6Q97|1|2|C|1210
6Q97|1|2|U|1211
6Q97|1|2|U|1212
6Q97|1|2|A|1213
6Q97|1|2|C|1214
6Q97|1|2|G|1215

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

SsrA-binding protein

Chain s

30S ribosomal protein S14