J3_6Q98_014

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6Q98|1|2|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Q98_014 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1678

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6Q98|1|2|C|826
6Q98|1|2|U|827
6Q98|1|2|U|828
6Q98|1|2|G|829
*
6Q98|1|2|C|857
6Q98|1|2|G|858
6Q98|1|2|G|859
6Q98|1|2|A|860
6Q98|1|2|G|861
*
6Q98|1|2|C|868
6Q98|1|2|G|869
6Q98|1|2|U|870
6Q98|1|2|U|871
6Q98|1|2|A|872
6Q98|1|2|A|873
6Q98|1|2|G|874

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain m

30S ribosomal protein S8

Chain z

30S ribosomal protein S21