J3_6Q98_018
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- 6Q98|1|2|C|1112
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q98_018 not in the Motif Atlas
- Homologous match to J3_6CZR_023
- Geometric discrepancy: 0.2521
- The information below is about J3_6CZR_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.2
- Basepair signature
- cWW-F-F-F-tHW-F-F-F-tSS-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6Q98|1|2|C|1063
6Q98|1|2|G|1064
6Q98|1|2|U|1065
6Q98|1|2|C|1066
6Q98|1|2|A|1067
6Q98|1|2|G|1068
*
6Q98|1|2|C|1107
6Q98|1|2|G|1108
6Q98|1|2|C|1109
6Q98|1|2|A|1110
6Q98|1|2|A|1111
6Q98|1|2|C|1112
6Q98|1|2|C|1113
*
6Q98|1|2|G|1187
6Q98|1|2|A|1188
6Q98|1|2|U|1189
6Q98|1|2|G|1190
6Q98|1|2|A|1191
6Q98|1|2|C|1192
6Q98|1|2|G|1193
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain g
- 30S ribosomal protein S2
- Chain h
- 30S ribosomal protein S3
- Chain j
- 30S ribosomal protein S5
- Chain n
- 30S ribosomal protein S9
- Chain o
- 30S ribosomal protein S10
- Chain s
- 30S ribosomal protein S14
Coloring options: