J3_6Q98_027
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CAUC*GUAU*AUUUAAAG
- Length
- 16 nucleotides
- Bulged bases
- 6Q98|1|1|A|2518, 6Q98|1|1|U|2519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q98_027 not in the Motif Atlas
- Geometric match to J3_4V9F_009
- Geometric discrepancy: 0.2491
- The information below is about J3_4V9F_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69441.1
- Basepair signature
- cWW-cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 1
Unit IDs
6Q98|1|1|C|2517
6Q98|1|1|A|2518
6Q98|1|1|U|2519
6Q98|1|1|C|2520
*
6Q98|1|1|G|2545
6Q98|1|1|U|2546
6Q98|1|1|A|2547
6Q98|1|1|U|2548
*
6Q98|1|1|A|2560
6Q98|1|1|U|2561
6Q98|1|1|U|2562
6Q98|1|1|U|2563
6Q98|1|1|A|2564
6Q98|1|1|A|2565
6Q98|1|1|A|2566
6Q98|1|1|G|2567
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L14
- Chain f
- 50S ribosomal protein L36
Coloring options: