J3_6Q98_029

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

6Q98|1|2|C|48, 6Q98|1|2|A|50, 6Q98|1|2|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Q98_029 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.1446

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6Q98|1|2|G|46
6Q98|1|2|C|47
6Q98|1|2|C|48
6Q98|1|2|U|49
6Q98|1|2|A|50
6Q98|1|2|A|51
6Q98|1|2|C|52
*
6Q98|1|2|G|359
6Q98|1|2|G|360
6Q98|1|2|G|361
6Q98|1|2|G|362
6Q98|1|2|A|363
6Q98|1|2|A|364
6Q98|1|2|U|365
6Q98|1|2|A|366
6Q98|1|2|U|367
*
6Q98|1|2|A|393
6Q98|1|2|G|394
6Q98|1|2|C|395

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain u

30S ribosomal protein S16