J3_6QDW_006

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QDW_006 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1051

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6QDW|1|b|C|1300
6QDW|1|b|G|1301
6QDW|1|b|G|1302
6QDW|1|b|A|1303
6QDW|1|b|A|1304
6QDW|1|b|G|1305
*
6QDW|1|b|C|1627
6QDW|1|b|A|1628
6QDW|1|b|G|1629
*
6QDW|1|b|C|1641
6QDW|1|b|A|1642
6QDW|1|b|A|1643
6QDW|1|b|G|1644

Current chains

Chain b

23S rRNA

Nearby chains