J3_6QDW_009
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CUA*UAG*CAUAAG
- Length
- 12 nucleotides
- Bulged bases
- 6QDW|1|b|U|2338
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6QDW_009 not in the Motif Atlas
- Homologous match to J3_5J7L_045
- Geometric discrepancy: 0.1268
- The information below is about J3_5J7L_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_61124.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6QDW|1|b|C|2299
6QDW|1|b|U|2300
6QDW|1|b|A|2301
*
6QDW|1|b|U|2325
6QDW|1|b|A|2326
6QDW|1|b|G|2327
*
6QDW|1|b|C|2336
6QDW|1|b|A|2337
6QDW|1|b|U|2338
6QDW|1|b|A|2339
6QDW|1|b|A|2340
6QDW|1|b|G|2341
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain a
- 5S ribosomal RNA; 5S rRNA
- Chain f
- 50S ribosomal protein L5
- Chain o
- 50S ribosomal protein L18
- Chain v
- Transfer RNA; tRNA
- Chain y
- 50S ribosomal protein L27
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