J3_6QNR_055

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6QNR|1|13|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QNR_055 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1586

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6QNR|1|13|C|990
6QNR|1|13|U|991
6QNR|1|13|U|992
6QNR|1|13|G|993
6QNR|1|13|A|994
6QNR|1|13|C|995
6QNR|1|13|A|996
6QNR|1|13|U|997
*
6QNR|1|13|A|1044
6QNR|1|13|C|1045
6QNR|1|13|A|1046
6QNR|1|13|G|1047
*
6QNR|1|13|C|1210
6QNR|1|13|U|1211
6QNR|1|13|U|1212
6QNR|1|13|A|1213
6QNR|1|13|C|1214
6QNR|1|13|G|1215

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 5I

30S ribosomal protein S14 type Z