J3_6QNR_058

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

6QNR|1|14|U|504, 6QNR|1|14|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QNR_058 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0907

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6QNR|1|14|G|30
6QNR|1|14|C|31
*
6QNR|1|14|G|474
6QNR|1|14|U|475
6QNR|1|14|G|476
6QNR|1|14|A|477
6QNR|1|14|A|478
6QNR|1|14|A|479
6QNR|1|14|A|480
6QNR|1|14|G|481
6QNR|1|14|A|482
6QNR|1|14|A|483
6QNR|1|14|C|484
*
6QNR|1|14|G|496
6QNR|1|14|A|497
6QNR|1|14|G|498
6QNR|1|14|U|499
6QNR|1|14|G|500
6QNR|1|14|A|501
6QNR|1|14|A|502
6QNR|1|14|A|503
6QNR|1|14|U|504
6QNR|1|14|A|505
6QNR|1|14|G|506
6QNR|1|14|A|507
6QNR|1|14|G|508
6QNR|1|14|C|509
6QNR|1|14|C|510

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 85

50S ribosomal protein L20

Chain A5

50S ribosomal protein L22

Chain C5

50S ribosomal protein L24