J3_6QNR_070
3D structure
- PDB id
- 6QNR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome elongation complex (EC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 6QNR|1|1H|U|530, 6QNR|1|1H|G|534
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6QNR_070 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.072
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6QNR|1|1H|G|30
6QNR|1|1H|C|31
*
6QNR|1|1H|G|501
6QNR|1|1H|U|502
6QNR|1|1H|G|503
6QNR|1|1H|A|504
6QNR|1|1H|A|505
6QNR|1|1H|A|506
6QNR|1|1H|A|507
6QNR|1|1H|G|508
6QNR|1|1H|A|509
6QNR|1|1H|A|510
6QNR|1|1H|C|511
*
6QNR|1|1H|G|522
6QNR|1|1H|A|523
6QNR|1|1H|G|524
6QNR|1|1H|U|525
6QNR|1|1H|G|526
6QNR|1|1H|A|527
6QNR|1|1H|A|528
6QNR|1|1H|A|529
6QNR|1|1H|U|530
6QNR|1|1H|A|531
6QNR|1|1H|G|532
6QNR|1|1H|A|533
6QNR|1|1H|G|534
6QNR|1|1H|C|535
6QNR|1|1H|C|536
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain C8
- 50S ribosomal protein L20
- Chain E8
- 50S ribosomal protein L22
- Chain G8
- 50S ribosomal protein L24
Coloring options: