J3_6RBE_004

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6RBE_004 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.2219

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6RBE|1|2|C|1161
6RBE|1|2|C|1162
6RBE|1|2|A|1163
6RBE|1|2|G|1164
*
6RBE|1|2|C|1581
6RBE|1|2|U|1582
6RBE|1|2|A|1583
6RBE|1|2|G|1584
6RBE|1|2|U|1585
6RBE|1|2|A|1586
6RBE|1|2|A|1587
*
6RBE|1|2|U|1609
6RBE|1|2|G|1610
6RBE|1|2|A|1611
6RBE|1|2|U|1612
6RBE|1|2|U|1613
6RBE|1|2|A|1614
6RBE|1|2|C|1615
6RBE|1|2|G|1616

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16-A

Chain c

40S ribosomal protein S28-A