J3_6RBE_007

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

6RBE|1|2|A|1217, 6RBE|1|2|G|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6RBE_007 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.284

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6RBE|1|2|C|1215
6RBE|1|2|C|1216
6RBE|1|2|A|1217
6RBE|1|2|G|1218
6RBE|1|2|A|1219
6RBE|1|2|C|1220
*
6RBE|1|2|G|1263
6RBE|1|2|G|1264
6RBE|1|2|G|1265
6RBE|1|2|U|1266
6RBE|1|2|G|1267
*
6RBE|1|2|U|1442
6RBE|1|2|U|1443
6RBE|1|2|A|1444
6RBE|1|2|G|1445
6RBE|1|2|A|1446
6RBE|1|2|C|1447
6RBE|1|2|G|1448

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S10-A

Chain d

40S ribosomal protein S29-A