3D structure

PDB id
6S0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.42 Å

Loop

Sequence
CUUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
6S0X|1|A|U|34, 6S0X|1|A|U|494
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6S0X_001 not in the Motif Atlas
Homologous match to J3_9DFE_003
Geometric discrepancy: 0.3679
The information below is about J3_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

6S0X|1|A|C|32
6S0X|1|A|U|33
6S0X|1|A|U|34
6S0X|1|A|G|35
*
6S0X|1|A|C|491
6S0X|1|A|G|492
6S0X|1|A|A|493
6S0X|1|A|U|494
6S0X|1|A|A|495
6S0X|1|A|G|496
6S0X|1|A|U|497
6S0X|1|A|G|498
6S0X|1|A|A|499
6S0X|1|A|A|500
6S0X|1|A|C|501
6S0X|1|A|C|502
6S0X|1|A|A|503
6S0X|1|A|G|504
6S0X|1|A|U|505
6S0X|1|A|A|506
6S0X|1|A|C|507
*
6S0X|1|A|G|514
6S0X|1|A|G|515
6S0X|1|A|A|516
6S0X|1|A|A|517
6S0X|1|A|A|518
6S0X|1|A|G|519

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain E
50S ribosomal protein L4
Chain O
50S ribosomal protein L20
Chain R
50S ribosomal protein L23

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1298 s