J3_6S0X_027

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S0X_027 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0782

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6S0X|1|A|G|1468
6S0X|1|A|G|1469
6S0X|1|A|G|1470
6S0X|1|A|A|1471
6S0X|1|A|C|1472
6S0X|1|A|G|1473
*
6S0X|1|A|C|1611
6S0X|1|A|C|1612
*
6S0X|1|A|G|1615
6S0X|1|A|A|1616
6S0X|1|A|A|1617
6S0X|1|A|A|1618
6S0X|1|A|A|1619
6S0X|1|A|G|1620
6S0X|1|A|C|1621

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2